| abmlog |
All possible Boolean Models Link Operator Generator |
| AGS |
Gastric Adenocarcinoma (cell line) |
| API |
Application Programming Interface |
| AUC |
Area Under the Curve |
| BioPax |
Biological Pathway Exchange |
| CASCADE |
CAncer Signaling CAusality DatabasE |
| CNA |
Copy Number Alterations |
| COVID-19 |
COrona VIrus Disease 2019 |
| Drabme |
Drug Response Analysis to Boolean Model Ensembles |
| emba |
Ensemble (Boolean) Model Biomarker Analysis |
| Gitsbe |
Generic Interactions To Specific Boolean Equations |
| GO |
Gene Ontology |
| GREEKC |
Gene Regulation Ensemble Effort for the Knowledge Commons |
| HPC |
High Performance Computing |
| HUPO-PSI |
HUman Proteome Organization - Proteomics Standards Initiative |
| IMEx |
The International Molecular Exchange Consortium |
| MI2CAST |
Minimum Information about a Molecular Interaction CAusal STatement |
| MIQL |
Molecular Interactions Query Language |
| MITAB |
Molecular Interaction TABular format |
| ODE |
Ordinary Differential Equation |
| PDE |
Partial Differential Equation |
| PKN |
Prior Knowledge Network |
| PPI |
Protein-Protein Interaction |
| PRC |
Precision Recall Curve |
| PSICQUIC |
Proteomics Standard Initiative Common QUery InterfaCe |
| ROC |
Receiver Operating Characteristic |
| SBGN |
Systems Biology Graphical Notation |
| TAMs |
Tumor Associated Macrophages |
| TF-TG |
Transcription Factor - Target Gene |
| UBDs (UniBioDicts) |
Unified Biological Dictionaries |
| UMAP |
Uniform Manifold Approximation and Projection (for dimension reduction) |
| VSM |
Visual Syntax Method |
| WC |
Whole Cell (modeling) |
| XML |
Extensible Markup Language |