emba 0.1.8 2021-01-07

emba 0.1.7 2020-09-22

  • Input functions that read model directories with .gitsbe files, now disregard other kind of files that might be inside these directories.
  • add minimum package dependencies in DESCRIPTION file
  • add JOSS paper

emba 0.1.6 2020-07-08

  • Fixed test for the update_biomarker_files function (writes to tmpdir() instead of the user’s library directory)

emba 0.1.5 2020-07-01

emba 0.1.4 2020-04-14

  • get_synergy_scores now supports reading both ensemble-wise and model-wise synergies files
  • add calculate.subsets.stats option to the general analysis functions (biomarker_*) that decides if the powerset of the observed synergies and the number of models predicting each subset is going to be calculated. The default value is set to FALSE to save computation time :)

emba 0.1.3 Unreleased

  • add function get_synergy_scores
  • fixed test that used a randomly generated matrix

emba 0.1.2 2020-02-06

  • add function get_avg_link_operator_diff_based_on_synergy_set_cmp
  • add function get_avg_link_operator_diff_based_on_specific_synergy_prediction
  • add function filter_network - to use for visualizing induced subgraphs
  • update dependencies (set usefun min version to 0.4.3)

emba 0.1.1 2019-10-21

  • Optimized count_models_that_predict_synergies function and added tests for it. For a benchmark see relative Stack Overflow thread

emba 0.1.0 Unreleased

  • Added a NEWS.md file to track changes to the package
  • Transferred functions from separate R scripts to the package
  • Finished code refactoring and splitting to different modules
  • Finished writing documentation for all functions